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GH165 GH GH family — see CAZy reference
740
target proteins
691
CGCs
999 / 740
tree leaves
97
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh165_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH165 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH165 | GH | 740 | — | — |
| GH33 | GH | 46 | — | — |
| S1_7 | S1 | 40 | — | — |
| S1_8 | S1 | 28 | — | — |
| S1_16 | S1 | 28 | — | — |
| S1_17 | S1 | 22 | — | — |
| S1_14 | S1 | 22 | — | — |
| S1_23 | S1 | 19 | — | — |
| S1_15 | S1 | 16 | — | — |
| GH177 | GH | 13 | — | — |
| S1_4 | S1 | 10 | — | — |
| S1_26 | S1 | 10 | — | — |
| S1_24 | S1 | 9 | — | — |
| S1_2 | S1 | 9 | — | — |
| GH32 | GH | 8 | — | — |
Downloads
| Full SSN (Cytoscape) | GH165_SSN.cys · 4.5 MB |
|---|---|
| Newick | gh165_phylogeny.max999.nwk |
| MUSCLE alignment | gh165_phylogeny.aln.faa |
| Target proteins (FASTA) | gh165_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |