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S1_4 S1 S1 family — see CAZy reference
2,244
target proteins
2,217
CGCs
999 / 2,244
tree leaves
405
co-occurring families
Overview
| Class | S1 |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of s1_4_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from S1_4 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| S1_4 | S1 | 2,244 | — | — |
| GT2 | GT | 493 | — | — |
| GT4 | GT | 130 | — | — |
| GH3 | GH | 119 | — | — |
| GH92 | GH | 109 | — | — |
| S1_8 | S1 | 88 | — | — |
| GH29 | GH | 87 | — | — |
| GH43_26 | GH | 84 | — | — |
| S1_7 | S1 | 80 | — | — |
| GT53 | GT | 80 | — | — |
| S1_16 | S1 | 75 | — | — |
| AA3_2 | AA | 74 | — | — |
| GH2_18 | GH | 70 | — | — |
| CE20 | CE | 61 | — | — |
| GH20 | GH | 61 | — | — |
Downloads
| Full SSN (Cytoscape) | S1_4_SSN.cys · 20.6 MB |
|---|---|
| Newick | s1_4_phylogeny.max999.nwk |
| MUSCLE alignment | s1_4_phylogeny.aln.faa |
| Target proteins (FASTA) | s1_4_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |