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CE20 CE CE family — see CAZy reference
1,726
target proteins
1,689
CGCs
999 / 1,726
tree leaves
305
co-occurring families
Overview
| Class | CE |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of ce20_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from CE20 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| CE20 | CE | 1,726 | — | — |
| GH3 | GH | 211 | — | — |
| S1_7 | S1 | 129 | — | — |
| GH92 | GH | 126 | — | — |
| GH10 | GH | 122 | — | — |
| S1_16 | S1 | 118 | — | — |
| S1_8 | S1 | 112 | — | — |
| S1_15 | S1 | 107 | — | — |
| GH29 | GH | 97 | — | — |
| GH26 | GH | 96 | — | — |
| GH43_12 | GH | 85 | — | — |
| GH33 | GH | 84 | — | — |
| GH95 | GH | 83 | — | — |
| GH78 | GH | 78 | — | — |
| GH20 | GH | 76 | — | — |
Downloads
| Full SSN (Cytoscape) | CE20_SSN.cys · 45.4 MB |
|---|---|
| Newick | ce20_phylogeny.max999.nwk |
| MUSCLE alignment | ce20_phylogeny.aln.faa |
| Target proteins (FASTA) | ce20_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |