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GH26 GH GH family — see CAZy reference
839
target proteins
730
CGCs
999 / 839
tree leaves
194
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh26_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH26 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH26 | GH | 839 | — | — |
| GH130_1 | GH | 146 | — | — |
| GT2 | GT | 85 | — | — |
| GH5_7 | GH | 78 | — | — |
| GH3 | GH | 62 | — | — |
| GH27 | GH | 55 | — | — |
| GH43_11 | GH | 54 | — | — |
| CE20 | CE | 54 | — | — |
| CE2 | CE | 36 | — | — |
| GH5_2 | GH | 33 | — | — |
| GH158 | GH | 32 | — | — |
| S1_17 | S1 | 31 | — | — |
| GH5_10 | GH | 22 | — | — |
| GH5_26 | GH | 20 | — | — |
| S1_8 | S1 | 19 | — | — |
Downloads
| Full SSN (Cytoscape) | GH26_SSN.cys · 4.8 MB |
|---|---|
| Newick | gh26_phylogeny.max999.nwk |
| MUSCLE alignment | gh26_phylogeny.aln.faa |
| Target proteins (FASTA) | gh26_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |