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GH130_1 GH GH family — see CAZy reference
324
target proteins
324
CGCs
all
tree leaves
132
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh130_1_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH130_1 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH130_1 | GH | 324 | — | — |
| GH26 | GH | 221 | — | — |
| GH5_7 | GH | 87 | — | — |
| GH27 | GH | 54 | — | — |
| GH3 | GH | 51 | — | — |
| CE20 | CE | 48 | — | — |
| S1_17 | S1 | 37 | — | — |
| GH5_41 | GH | 35 | — | — |
| GH5_2 | GH | 32 | — | — |
| CE2 | CE | 31 | — | — |
| GH5_26 | GH | 19 | — | — |
| GH130_2 | GH | 16 | — | — |
| GH5_10 | GH | 16 | — | — |
| GH94 | GH | 13 | — | — |
| GH9 | GH | 12 | — | — |
Downloads
| Full SSN (Cytoscape) | GH130_1_SSN.cys · 5.0 MB |
|---|---|
| Newick | gh130_1_phylogeny.nwk |
| MUSCLE alignment | gh130_1_phylogeny.aln.faa |
| Target proteins (FASTA) | gh130_1_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |