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GH9 GH GH family — see CAZy reference
928
target proteins
902
CGCs
999 / 928
tree leaves
187
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh9_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH9 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH9 | GH | 928 | — | — |
| GH94 | GH | 164 | — | — |
| GH20 | GH | 162 | — | — |
| GH3 | GH | 74 | — | — |
| GT2 | GT | 52 | — | — |
| GH1 | GH | 30 | — | — |
| GH10 | GH | 28 | — | — |
| GH26 | GH | 27 | — | — |
| GT4 | GT | 18 | — | — |
| GH18 | GH | 16 | — | — |
| CE20 | CE | 15 | — | — |
| GH5_7 | GH | 14 | — | — |
| S1_7 | S1 | 14 | — | — |
| GH48 | GH | 13 | — | — |
| S1_15 | S1 | 13 | — | — |
Downloads
| Full SSN (Cytoscape) | GH9_SSN.cys · 9.0 MB |
|---|---|
| Newick | gh9_phylogeny.max999.nwk |
| MUSCLE alignment | gh9_phylogeny.aln.faa |
| Target proteins (FASTA) | gh9_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |