↵
GH5_7 GH GH family — see CAZy reference
213
target proteins
212
CGCs
all
tree leaves
125
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh5_7_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH5_7 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH5_7 | GH | 213 | — | — |
| GH26 | GH | 130 | — | — |
| GH130_1 | GH | 87 | — | — |
| GH3 | GH | 65 | — | — |
| CE20 | CE | 55 | — | — |
| GH27 | GH | 49 | — | — |
| CE2 | CE | 28 | — | — |
| GH5_2 | GH | 27 | — | — |
| S1_17 | S1 | 22 | — | — |
| GH9 | GH | 19 | — | — |
| S1_7 | S1 | 14 | — | — |
| GH5_26 | GH | 14 | — | — |
| GH173 | GH | 13 | — | — |
| GH5_10 | GH | 13 | — | — |
| GH5_41 | GH | 11 | — | — |
Downloads
| Full SSN (Cytoscape) | GH5_7_SSN.cys · 1.5 MB |
|---|---|
| Newick | gh5_7_phylogeny.nwk |
| MUSCLE alignment | gh5_7_phylogeny.aln.faa |
| Target proteins (FASTA) | gh5_7_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |