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GH27 GH GH family — see CAZy reference
505
target proteins
492
CGCs
999 / 505
tree leaves
237
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh27_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH27 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH27 | GH | 505 | — | — |
| GH26 | GH | 95 | — | — |
| GH3 | GH | 61 | — | — |
| CE20 | CE | 59 | — | — |
| GH130_1 | GH | 53 | — | — |
| GH5_7 | GH | 48 | — | — |
| GH20 | GH | 46 | — | — |
| GH92 | GH | 45 | — | — |
| GH51_1 | GH | 44 | — | — |
| GH29 | GH | 36 | — | — |
| GH2_10 | GH | 35 | — | — |
| GH127 | GH | 31 | — | — |
| GH2_1 | GH | 30 | — | — |
| GH95 | GH | 28 | — | — |
| S1_20 | S1 | 28 | — | — |
Downloads
| Full SSN (Cytoscape) | GH27_SSN.cys · 4.3 MB |
|---|---|
| Newick | gh27_phylogeny.max999.nwk |
| MUSCLE alignment | gh27_phylogeny.aln.faa |
| Target proteins (FASTA) | gh27_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |