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GH127 GH GH family — see CAZy reference
897
target proteins
844
CGCs
999 / 897
tree leaves
229
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh127_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH127 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH127 | GH | 897 | — | — |
| S1_7 | S1 | 97 | — | — |
| GH51_1 | GH | 80 | — | — |
| S1_19 | S1 | 73 | — | — |
| S1_4 | S1 | 62 | — | — |
| GH78 | GH | 55 | — | — |
| PL1_2 | PL | 49 | — | — |
| GH92 | GH | 48 | — | — |
| GH2_18 | GH | 46 | — | — |
| GH16_13 | GH | 42 | — | — |
| GH43_26 | GH | 39 | — | — |
| GH43_4 | GH | 39 | — | — |
| GH146 | GH | 33 | — | — |
| S1_8 | S1 | 33 | — | — |
| S1_16 | S1 | 32 | — | — |
Downloads
| Full SSN (Cytoscape) | GH127_SSN.cys · 13.2 MB |
|---|---|
| Newick | gh127_phylogeny.max999.nwk |
| MUSCLE alignment | gh127_phylogeny.aln.faa |
| Target proteins (FASTA) | gh127_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |