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GH146 GH GH family — see CAZy reference
391
target proteins
384
CGCs
all
tree leaves
182
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh146_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH146 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH146 | GH | 391 | — | — |
| GH43_26 | GH | 102 | — | — |
| GH43_29 | GH | 93 | — | — |
| GH51_1 | GH | 79 | — | — |
| GH43_5 | GH | 68 | — | — |
| CE1 | CE | 68 | — | — |
| GH43_4 | GH | 56 | — | — |
| GH97 | GH | 47 | — | — |
| GH127 | GH | 36 | — | — |
| S1_4 | S1 | 33 | — | — |
| GH10 | GH | 33 | — | — |
| GH3 | GH | 31 | — | — |
| GH95 | GH | 29 | — | — |
| GH27 | GH | 28 | — | — |
| GH51_2 | GH | 27 | — | — |
Downloads
| Full SSN (Cytoscape) | GH146_SSN.cys · 3.2 MB |
|---|---|
| Newick | gh146_phylogeny.nwk |
| MUSCLE alignment | gh146_phylogeny.aln.faa |
| Target proteins (FASTA) | gh146_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |