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GH43_29 GH GH family — see CAZy reference
306
target proteins
275
CGCs
all
tree leaves
174
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh43_29_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH43_29 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH43_29 | GH | 306 | — | — |
| CE1 | CE | 95 | — | — |
| GH51_1 | GH | 90 | — | — |
| GH43_26 | GH | 85 | — | — |
| GH146 | GH | 81 | — | — |
| GH3 | GH | 80 | — | — |
| GH43_5 | GH | 77 | — | — |
| GH43_4 | GH | 68 | — | — |
| GH97 | GH | 60 | — | — |
| GH10 | GH | 51 | — | — |
| GH78 | GH | 43 | — | — |
| GH43_10 | GH | 35 | — | — |
| GH95 | GH | 35 | — | — |
| GH51_2 | GH | 35 | — | — |
| GH43_12 | GH | 34 | — | — |
Downloads
| Full SSN (Cytoscape) | GH43_29_SSN.cys · 3.1 MB |
|---|---|
| Newick | gh43_29_phylogeny.nwk |
| MUSCLE alignment | gh43_29_phylogeny.aln.faa |
| Target proteins (FASTA) | gh43_29_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |