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GH51_2 GH GH family — see CAZy reference
155
target proteins
153
CGCs
all
tree leaves
116
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh51_2_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH51_2 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH51_2 | GH | 155 | — | — |
| GH51_1 | GH | 50 | — | — |
| GH43_5 | GH | 41 | — | — |
| GH43_4 | GH | 40 | — | — |
| GH43_29 | GH | 39 | — | — |
| GH146 | GH | 28 | — | — |
| GH127 | GH | 27 | — | — |
| S1_27 | S1 | 23 | — | — |
| CE1 | CE | 17 | — | — |
| GH43_19 | GH | 15 | — | — |
| GH27 | GH | 13 | — | — |
| GH2_1 | GH | 12 | — | — |
| GH97 | GH | 11 | — | — |
| S1_4 | S1 | 10 | — | — |
| GH43_26 | GH | 9 | — | — |
Downloads
| Full SSN (Cytoscape) | GH51_2_SSN.cys · 0.7 MB |
|---|---|
| Newick | gh51_2_phylogeny.nwk |
| MUSCLE alignment | gh51_2_phylogeny.aln.faa |
| Target proteins (FASTA) | gh51_2_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |