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GH43_19 GH GH family — see CAZy reference
105
target proteins
88
CGCs
all
tree leaves
94
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh43_19_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH43_19 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH43_19 | GH | 105 | — | — |
| GH2_10 | GH | 30 | — | — |
| GH154 | GH | 24 | — | — |
| PL42 | PL | 18 | — | — |
| GH2_1 | GH | 18 | — | — |
| GH27 | GH | 17 | — | — |
| GH51_2 | GH | 16 | — | — |
| GH105 | GH | 15 | — | — |
| GH92 | GH | 14 | — | — |
| GH43_24 | GH | 13 | — | — |
| GH88 | GH | 12 | — | — |
| GH16_3 | GH | 12 | — | — |
| GH30_4 | GH | 12 | — | — |
| GH43_29 | GH | 11 | — | — |
| GH43_34 | GH | 11 | — | — |
Downloads
| Full SSN (Cytoscape) | GH43_19_SSN.cys · 0.3 MB |
|---|---|
| Newick | gh43_19_phylogeny.nwk |
| MUSCLE alignment | gh43_19_phylogeny.aln.faa |
| Target proteins (FASTA) | gh43_19_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |