↵
GH30_4 GH GH family — see CAZy reference
168
target proteins
145
CGCs
all
tree leaves
101
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh30_4_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH30_4 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH30_4 | GH | 168 | — | — |
| GH2_10 | GH | 40 | — | — |
| S1_16 | S1 | 34 | — | — |
| GH2_20 | GH | 30 | — | — |
| S1_8 | S1 | 26 | — | — |
| GH2_1 | GH | 23 | — | — |
| S1_20 | S1 | 21 | — | — |
| S1_15 | S1 | 16 | — | — |
| GH43_19 | GH | 11 | — | — |
| GH154 | GH | 8 | — | — |
| GH43_34 | GH | 8 | — | — |
| GH35 | GH | 7 | — | — |
| GH29 | GH | 6 | — | — |
| GH95 | GH | 6 | — | — |
| GH105 | GH | 6 | — | — |
Downloads
| Full SSN (Cytoscape) | GH30_4_SSN.cys · 0.8 MB |
|---|---|
| Newick | gh30_4_phylogeny.nwk |
| MUSCLE alignment | gh30_4_phylogeny.aln.faa |
| Target proteins (FASTA) | gh30_4_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |