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GH2_20 GH GH family — see CAZy reference
204
target proteins
183
CGCs
all
tree leaves
137
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh2_20_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH2_20 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH2_20 | GH | 204 | — | — |
| S1_16 | S1 | 48 | — | — |
| S1_8 | S1 | 40 | — | — |
| GH30_4 | GH | 37 | — | — |
| S1_15 | S1 | 30 | — | — |
| GH35 | GH | 15 | — | — |
| GH95 | GH | 15 | — | — |
| GH106 | GH | 14 | — | — |
| GH2_10 | GH | 12 | — | — |
| GH29 | GH | 11 | — | — |
| S1_20 | S1 | 11 | — | — |
| GH27 | GH | 10 | — | — |
| CE20 | CE | 10 | — | — |
| GH105 | GH | 10 | — | — |
| GH28 | GH | 10 | — | — |
Downloads
| Full SSN (Cytoscape) | GH2_20_SSN.cys · 1.1 MB |
|---|---|
| Newick | gh2_20_phylogeny.nwk |
| MUSCLE alignment | gh2_20_phylogeny.aln.faa |
| Target proteins (FASTA) | gh2_20_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |