↵
GH106 GH GH family — see CAZy reference
708
target proteins
634
CGCs
999 / 708
tree leaves
223
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh106_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH106 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH106 | GH | 708 | — | — |
| GH78 | GH | 193 | — | — |
| GH105 | GH | 115 | — | — |
| GH28 | GH | 92 | — | — |
| CE12 | CE | 70 | — | — |
| S1_8 | S1 | 69 | — | — |
| GH3 | GH | 59 | — | — |
| S1_7 | S1 | 53 | — | — |
| S1_16 | S1 | 52 | — | — |
| GH2_1 | GH | 44 | — | — |
| GH43_18 | GH | 42 | — | — |
| CE20 | CE | 39 | — | — |
| PL1_2 | PL | 38 | — | — |
| S1_27 | S1 | 36 | — | — |
| GH2_10 | GH | 35 | — | — |
Downloads
| Full SSN (Cytoscape) | GH106_SSN.cys · 4.5 MB |
|---|---|
| Newick | gh106_phylogeny.max999.nwk |
| MUSCLE alignment | gh106_phylogeny.aln.faa |
| Target proteins (FASTA) | gh106_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |