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GH78 GH GH family — see CAZy reference
1,515
target proteins
1,327
CGCs
999 / 1,515
tree leaves
281
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh78_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH78 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH78 | GH | 1,515 | — | — |
| GH106 | GH | 157 | — | — |
| S1_8 | S1 | 142 | — | — |
| GH3 | GH | 140 | — | — |
| S1_7 | S1 | 128 | — | — |
| S1_16 | S1 | 102 | — | — |
| S1_27 | S1 | 67 | — | — |
| GH92 | GH | 54 | — | — |
| GH105 | GH | 53 | — | — |
| PL1_2 | PL | 52 | — | — |
| S1_17 | S1 | 52 | — | — |
| GH2_10 | GH | 50 | — | — |
| GH2_1 | GH | 49 | — | — |
| CE20 | CE | 49 | — | — |
| S1_25 | S1 | 46 | — | — |
Downloads
| Full SSN (Cytoscape) | GH78_SSN.cys · 18.1 MB |
|---|---|
| Newick | gh78_phylogeny.max999.nwk |
| MUSCLE alignment | gh78_phylogeny.aln.faa |
| Target proteins (FASTA) | gh78_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |