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CE1 CE CE family — see CAZy reference
777
target proteins
603
CGCs
999 / 777
tree leaves
183
co-occurring families
Overview
| Class | CE |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of ce1_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from CE1 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| CE1 | CE | 777 | — | — |
| GH10 | GH | 80 | — | — |
| GH97 | GH | 60 | — | — |
| GT2 | GT | 58 | — | — |
| GH43_29 | GH | 55 | — | — |
| GH3 | GH | 55 | — | — |
| GT89 | GT | 48 | — | — |
| GH95 | GH | 46 | — | — |
| GH43_10 | GH | 45 | — | — |
| GH43_12 | GH | 44 | — | — |
| GH13_46 | GH | 42 | — | — |
| GH65 | GH | 42 | — | — |
| GH13_47 | GH | 36 | — | — |
| CE6 | CE | 33 | — | — |
| GH13_19 | GH | 31 | — | — |
Downloads
| Full SSN (Cytoscape) | CE1_SSN.cys · 3.4 MB |
|---|---|
| Newick | ce1_phylogeny.max999.nwk |
| MUSCLE alignment | ce1_phylogeny.aln.faa |
| Target proteins (FASTA) | ce1_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |