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CE6 CE CE family — see CAZy reference
181
target proteins
180
CGCs
all
tree leaves
129
co-occurring families
Overview
| Class | CE |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of ce6_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from CE6 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| CE6 | CE | 181 | — | — |
| CE1 | CE | 102 | — | — |
| GH10 | GH | 50 | — | — |
| GH43_29 | GH | 43 | — | — |
| GH97 | GH | 41 | — | — |
| GH3 | GH | 40 | — | — |
| GH95 | GH | 37 | — | — |
| GH43_12 | GH | 35 | — | — |
| CE20 | CE | 29 | — | — |
| GH43_10 | GH | 27 | — | — |
| GH43_2 | GH | 20 | — | — |
| GH173 | GH | 19 | — | — |
| GH115 | GH | 18 | — | — |
| CE15 | CE | 17 | — | — |
| GH43_1 | GH | 17 | — | — |
Downloads
| Full SSN (Cytoscape) | CE6_SSN.cys · 0.9 MB |
|---|---|
| Newick | ce6_phylogeny.nwk |
| MUSCLE alignment | ce6_phylogeny.aln.faa |
| Target proteins (FASTA) | ce6_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |