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CE15 CE CE family — see CAZy reference
725
target proteins
720
CGCs
999 / 725
tree leaves
177
co-occurring families
Overview
| Class | CE |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of ce15_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from CE15 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| CE15 | CE | 725 | — | — |
| GH10 | GH | 57 | — | — |
| CE1 | CE | 48 | — | — |
| S1_7 | S1 | 42 | — | — |
| S1_16 | S1 | 41 | — | — |
| CE20 | CE | 39 | — | — |
| S1_8 | S1 | 38 | — | — |
| GH3 | GH | 25 | — | — |
| S1_17 | S1 | 25 | — | — |
| S1_24 | S1 | 23 | — | — |
| GH43_12 | GH | 22 | — | — |
| GH115 | GH | 22 | — | — |
| GH33 | GH | 22 | — | — |
| S1_15 | S1 | 22 | — | — |
| GH95 | GH | 21 | — | — |
Downloads
| Full SSN (Cytoscape) | CE15_SSN.cys · 5.5 MB |
|---|---|
| Newick | ce15_phylogeny.max999.nwk |
| MUSCLE alignment | ce15_phylogeny.aln.faa |
| Target proteins (FASTA) | ce15_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |