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GH10 GH GH family — see CAZy reference
1,542
target proteins
1,390
CGCs
999 / 1,542
tree leaves
266
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh10_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH10 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH10 | GH | 1,542 | — | — |
| GH3 | GH | 297 | — | — |
| GH43_1 | GH | 229 | — | — |
| S1_7 | S1 | 179 | — | — |
| GH43_12 | GH | 141 | — | — |
| GH67 | GH | 131 | — | — |
| CE1 | CE | 116 | — | — |
| GH115 | GH | 102 | — | — |
| CE20 | CE | 93 | — | — |
| S1_8 | S1 | 85 | — | — |
| GT2 | GT | 70 | — | — |
| S1_15 | S1 | 50 | — | — |
| GH43_10 | GH | 46 | — | — |
| GH43_29 | GH | 43 | — | — |
| GH95 | GH | 40 | — | — |
Downloads
| Full SSN (Cytoscape) | GH10_SSN.cys · 21.4 MB |
|---|---|
| Newick | gh10_phylogeny.max999.nwk |
| MUSCLE alignment | gh10_phylogeny.aln.faa |
| Target proteins (FASTA) | gh10_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |