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GH43_1 GH GH family — see CAZy reference
454
target proteins
452
CGCs
999 / 454
tree leaves
133
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh43_1_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH43_1 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH43_1 | GH | 454 | — | — |
| GH10 | GH | 305 | — | — |
| GH3 | GH | 103 | — | — |
| S1_7 | S1 | 99 | — | — |
| GH43_12 | GH | 73 | — | — |
| CE20 | CE | 66 | — | — |
| S1_8 | S1 | 63 | — | — |
| GH67 | GH | 62 | — | — |
| GH115 | GH | 56 | — | — |
| CE1 | CE | 56 | — | — |
| PL9 | PL | 47 | — | — |
| GH95 | GH | 29 | — | — |
| GH43_10 | GH | 25 | — | — |
| GH43_29 | GH | 25 | — | — |
| S1_4 | S1 | 23 | — | — |
Downloads
| Full SSN (Cytoscape) | GH43_1_SSN.cys · 9.2 MB |
|---|---|
| Newick | gh43_1_phylogeny.max999.nwk |
| MUSCLE alignment | gh43_1_phylogeny.aln.faa |
| Target proteins (FASTA) | gh43_1_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |