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PL9 PL PL family — see CAZy reference
146
target proteins
451
CGCs
999 / 146
tree leaves
135
co-occurring families
Overview
| Class | PL |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of pl9_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from PL9 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| PL9 | PL | 146 | — | — |
| PL9_2 | PL | 141 | — | — |
| PL9_1 | PL | 101 | — | — |
| PL9_4 | PL | 53 | — | — |
| GH43_1 | GH | 48 | — | — |
| S1_8 | S1 | 42 | — | — |
| S1_7 | S1 | 41 | — | — |
| CE8 | CE | 41 | — | — |
| GH28 | GH | 39 | — | — |
| GT4 | GT | 39 | — | — |
| GH10 | GH | 34 | — | — |
| CE12 | CE | 33 | — | — |
| GH105 | GH | 28 | — | — |
| PL1 | PL | 20 | — | — |
| PL1_2 | PL | 20 | — | — |
Downloads
| Full SSN (Cytoscape) | PL9_SSN.cys · 1.0 MB |
|---|---|
| Newick | pl9_phylogeny.max999.nwk |
| MUSCLE alignment | pl9_phylogeny.aln.faa |
| Target proteins (FASTA) | pl9_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |