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PL9_2 PL PL family — see CAZy reference
141
target proteins
136
CGCs
all
tree leaves
43
co-occurring families
Overview
| Class | PL |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of pl9_2_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from PL9_2 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| PL9_2 | PL | 141 | — | — |
| GT4 | GT | 17 | — | — |
| GT2 | GT | 5 | — | — |
| GH109 | GH | 5 | — | — |
| S1_4 | S1 | 4 | — | — |
| GH36 | GH | 4 | — | — |
| S1_37 | S1 | 3 | — | — |
| S1_25 | S1 | 3 | — | — |
| S1_7 | S1 | 2 | — | — |
| GH89 | GH | 2 | — | — |
| GH4 | GH | 2 | — | — |
| S1_6 | S1 | 2 | — | — |
| S1_11 | S1 | 2 | — | — |
| S1_9 | S1 | 2 | — | — |
| GH31_19 | GH | 2 | — | — |
Downloads
| Full SSN (Cytoscape) | PL9_2_SSN.cys · 0.1 MB |
|---|---|
| Newick | pl9_2_phylogeny.nwk |
| MUSCLE alignment | pl9_2_phylogeny.aln.faa |
| Target proteins (FASTA) | pl9_2_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |