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GH109 GH GH family — see CAZy reference
1,131
target proteins
1,124
CGCs
999 / 1,131
tree leaves
171
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh109_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH109 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH109 | GH | 1,131 | — | — |
| GH20 | GH | 85 | — | — |
| GH2_10 | GH | 74 | — | — |
| S1_20 | S1 | 62 | — | — |
| GH29 | GH | 51 | — | — |
| S1_8 | S1 | 51 | — | — |
| S1_16 | S1 | 47 | — | — |
| GH177 | GH | 45 | — | — |
| GT4 | GT | 41 | — | — |
| GH3 | GH | 38 | — | — |
| S1_15 | S1 | 30 | — | — |
| GT2 | GT | 28 | — | — |
| S1_11 | S1 | 26 | — | — |
| S1_7 | S1 | 23 | — | — |
| S1_23 | S1 | 21 | — | — |
Downloads
| Full SSN (Cytoscape) | GH109_SSN.cys · 27.2 MB |
|---|---|
| Newick | gh109_phylogeny.max999.nwk |
| MUSCLE alignment | gh109_phylogeny.aln.faa |
| Target proteins (FASTA) | gh109_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |