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S1_23 S1 S1 family — see CAZy reference
658
target proteins
635
CGCs
999 / 658
tree leaves
226
co-occurring families
Overview
| Class | S1 |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of s1_23_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from S1_23 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| S1_23 | S1 | 658 | — | — |
| GT4 | GT | 102 | — | — |
| GH29 | GH | 75 | — | — |
| S1_7 | S1 | 61 | — | — |
| PL40 | PL | 59 | — | — |
| GT2 | GT | 50 | — | — |
| GH95 | GH | 39 | — | — |
| GH177 | GH | 39 | — | — |
| S1_17 | S1 | 37 | — | — |
| S1_8 | S1 | 37 | — | — |
| S1_16 | S1 | 33 | — | — |
| CE20 | CE | 31 | — | — |
| GH33 | GH | 31 | — | — |
| GH88 | GH | 31 | — | — |
| GH141 | GH | 29 | — | — |
Downloads
| Full SSN (Cytoscape) | S1_23_SSN.cys · 2.3 MB |
|---|---|
| Newick | s1_23_phylogeny.max999.nwk |
| MUSCLE alignment | s1_23_phylogeny.aln.faa |
| Target proteins (FASTA) | s1_23_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |