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GH20 GH GH family — see CAZy reference
3,755
target proteins
3,628
CGCs
999 / 3,755
tree leaves
283
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh20_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH20 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH20 | GH | 3,755 | — | — |
| GH92 | GH | 428 | — | — |
| CE9 | CE | 299 | — | — |
| S1_9 | S1 | 246 | — | — |
| GH2_13 | GH | 223 | — | — |
| GH29 | GH | 204 | — | — |
| S1_11 | S1 | 181 | — | — |
| GH9 | GH | 157 | — | — |
| GH3 | GH | 150 | — | — |
| GT2 | GT | 137 | — | — |
| GH94 | GH | 123 | — | — |
| S1_7 | S1 | 97 | — | — |
| CBM9 | CBM | 92 | — | — |
| S1_15 | S1 | 82 | — | — |
| GH33 | GH | 81 | — | — |
Downloads
| Full SSN (Cytoscape) | GH20_SSN.cys · 132.7 MB |
|---|---|
| Newick | gh20_phylogeny.max999.nwk |
| MUSCLE alignment | gh20_phylogeny.aln.faa |
| Target proteins (FASTA) | gh20_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |