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GH2_13 GH GH family — see CAZy reference
1,070
target proteins
1,058
CGCs
999 / 1,070
tree leaves
189
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh2_13_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH2_13 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH2_13 | GH | 1,070 | — | — |
| GH92 | GH | 241 | — | — |
| GH20 | GH | 226 | — | — |
| GH3 | GH | 44 | — | — |
| GT2 | GT | 42 | — | — |
| S1_6 | S1 | 39 | — | — |
| S1_8 | S1 | 33 | — | — |
| GH1 | GH | 26 | — | — |
| S1_4 | S1 | 25 | — | — |
| CBM9 | CBM | 25 | — | — |
| GH29 | GH | 23 | — | — |
| CE4 | CE | 22 | — | — |
| GH117 | GH | 21 | — | — |
| GH38 | GH | 21 | — | — |
| GH125 | GH | 21 | — | — |
Downloads
| Full SSN (Cytoscape) | GH2_13_SSN.cys · 26.7 MB |
|---|---|
| Newick | gh2_13_phylogeny.max999.nwk |
| MUSCLE alignment | gh2_13_phylogeny.aln.faa |
| Target proteins (FASTA) | gh2_13_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |