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GH38 GH GH family — see CAZy reference
1,269
target proteins
1,217
CGCs
999 / 1,269
tree leaves
210
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh38_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH38 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH38 | GH | 1,269 | — | — |
| GH92 | GH | 76 | — | — |
| GH125 | GH | 55 | — | — |
| GH13_18 | GH | 45 | — | — |
| GH1 | GH | 38 | — | — |
| GH3 | GH | 33 | — | — |
| GH5_18 | GH | 31 | — | — |
| S1_15 | S1 | 31 | — | — |
| CBM9 | CBM | 31 | — | — |
| GH85 | GH | 30 | — | — |
| GH29 | GH | 25 | — | — |
| GH4 | GH | 24 | — | — |
| GH20 | GH | 24 | — | — |
| GH2_13 | GH | 21 | — | — |
| GH36 | GH | 20 | — | — |
Downloads
| Full SSN (Cytoscape) | GH38_SSN.cys · 16.0 MB |
|---|---|
| Newick | gh38_phylogeny.max999.nwk |
| MUSCLE alignment | gh38_phylogeny.aln.faa |
| Target proteins (FASTA) | gh38_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |