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CE4 CE CE family — see CAZy reference
2,366
target proteins
2,340
CGCs
999 / 2,366
tree leaves
172
co-occurring families
Overview
| Class | CE |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of ce4_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from CE4 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| CE4 | CE | 2,366 | — | — |
| GT2 | GT | 536 | — | — |
| GT4 | GT | 175 | — | — |
| GT9 | GT | 86 | — | — |
| GH92 | GH | 56 | — | — |
| GT28 | GT | 55 | — | — |
| S1_4 | S1 | 46 | — | — |
| S1_6 | S1 | 39 | — | — |
| GH20 | GH | 26 | — | — |
| GT51 | GT | 24 | — | — |
| S1_2 | S1 | 23 | — | — |
| S1_15 | S1 | 22 | — | — |
| GH2_13 | GH | 22 | — | — |
| S1_8 | S1 | 21 | — | — |
| GT30 | GT | 20 | — | — |
Downloads
| Full SSN (Cytoscape) | CE4_SSN.cys · 21.8 MB |
|---|---|
| Newick | ce4_phylogeny.max999.nwk |
| MUSCLE alignment | ce4_phylogeny.aln.faa |
| Target proteins (FASTA) | ce4_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |