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GH94 GH GH family — see CAZy reference
907
target proteins
866
CGCs
999 / 907
tree leaves
176
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh94_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH94 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH94 | GH | 907 | — | — |
| GH3 | GH | 169 | — | — |
| GH9 | GH | 162 | — | — |
| GH20 | GH | 127 | — | — |
| GH1 | GH | 94 | — | — |
| GH144 | GH | 53 | — | — |
| CBM9 | CBM | 47 | — | — |
| GH116 | GH | 40 | — | — |
| S1_7 | S1 | 37 | — | — |
| GH16_3 | GH | 21 | — | — |
| GH161 | GH | 19 | — | — |
| S1_11 | S1 | 17 | — | — |
| GH35 | GH | 14 | — | — |
| GH13_31 | GH | 14 | — | — |
| GH30_1 | GH | 14 | — | — |
Downloads
| Full SSN (Cytoscape) | GH94_SSN.cys · 14.6 MB |
|---|---|
| Newick | gh94_phylogeny.max999.nwk |
| MUSCLE alignment | gh94_phylogeny.aln.faa |
| Target proteins (FASTA) | gh94_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |