↵
GH161 GH GH family — see CAZy reference
112
target proteins
111
CGCs
all
tree leaves
44
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh161_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH161 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH161 | GH | 112 | — | — |
| GH16_3 | GH | 51 | — | — |
| GH30_1 | GH | 46 | — | — |
| GH3 | GH | 32 | — | — |
| GH1 | GH | 23 | — | — |
| GH94 | GH | 19 | — | — |
| GT2 | GT | 7 | — | — |
| CBM102 | CBM | 7 | — | — |
| CBM4 | CBM | 5 | — | — |
| GT4 | GT | 4 | — | — |
| GH5_45 | GH | 4 | — | — |
| GH50 | GH | 3 | — | — |
| GH16_21 | GH | 2 | — | — |
| GH5_22 | GH | 2 | — | — |
| S1_7 | S1 | 2 | — | — |
Downloads
| Full SSN (Cytoscape) | GH161_SSN.cys · 0.4 MB |
|---|---|
| Newick | gh161_phylogeny.nwk |
| MUSCLE alignment | gh161_phylogeny.aln.faa |
| Target proteins (FASTA) | gh161_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |