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GH30_1 GH GH family — see CAZy reference
1,060
target proteins
1,048
CGCs
999 / 1,060
tree leaves
164
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh30_1_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH30_1 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH30_1 | GH | 1,060 | — | — |
| GH17 | GH | 1,000 | — | — |
| GH149 | GH | 499 | — | — |
| GH16_3 | GH | 491 | — | — |
| CBM102 | CBM | 224 | — | — |
| GH3 | GH | 220 | — | — |
| S1_56 | S1 | 194 | — | — |
| GH30_3 | GH | 116 | — | — |
| GH5_46 | GH | 115 | — | — |
| GH1 | GH | 77 | — | — |
| GH16 | GH | 66 | — | — |
| CBM103 | CBM | 64 | — | — |
| GH161 | GH | 47 | — | — |
| GH158 | GH | 40 | — | — |
| S1_15 | S1 | 38 | — | — |
Downloads
| Full SSN (Cytoscape) | GH30_1_SSN.cys · 51.8 MB |
|---|---|
| Newick | gh30_1_phylogeny.max999.nwk |
| MUSCLE alignment | gh30_1_phylogeny.aln.faa |
| Target proteins (FASTA) | gh30_1_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |