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GH5_46 GH GH family — see CAZy reference
421
target proteins
415
CGCs
999 / 421
tree leaves
104
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh5_46_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH5_46 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH5_46 | GH | 421 | — | — |
| GH30_1 | GH | 120 | — | — |
| GH16_3 | GH | 106 | — | — |
| GH3 | GH | 105 | — | — |
| GH30_3 | GH | 73 | — | — |
| GH16 | GH | 51 | — | — |
| CBM102 | CBM | 42 | — | — |
| S1_19 | S1 | 40 | — | — |
| S1_30 | S1 | 38 | — | — |
| GH149 | GH | 15 | — | — |
| GH16_25 | GH | 13 | — | — |
| CBM103 | CBM | 12 | — | — |
| S1_7 | S1 | 11 | — | — |
| GH2_4 | GH | 11 | — | — |
| GH1 | GH | 11 | — | — |
Downloads
| Full SSN (Cytoscape) | GH5_46_SSN.cys · 5.7 MB |
|---|---|
| Newick | gh5_46_phylogeny.max999.nwk |
| MUSCLE alignment | gh5_46_phylogeny.aln.faa |
| Target proteins (FASTA) | gh5_46_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |