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GH30_3 GH GH family — see CAZy reference
340
target proteins
291
CGCs
all
tree leaves
108
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh30_3_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH30_3 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH30_3 | GH | 340 | — | — |
| GH30_1 | GH | 98 | — | — |
| GH3 | GH | 80 | — | — |
| GH5_46 | GH | 58 | — | — |
| GH16_3 | GH | 53 | — | — |
| GH1 | GH | 17 | — | — |
| S1_8 | S1 | 12 | — | — |
| S1_27 | S1 | 10 | — | — |
| CBM103 | CBM | 10 | — | — |
| GH5_47 | GH | 9 | — | — |
| S1_20 | S1 | 6 | — | — |
| GH144 | GH | 6 | — | — |
| CE20 | CE | 6 | — | — |
| S1_15 | S1 | 5 | — | — |
| GH78 | GH | 5 | — | — |
Downloads
| Full SSN (Cytoscape) | GH30_3_SSN.cys · 3.6 MB |
|---|---|
| Newick | gh30_3_phylogeny.nwk |
| MUSCLE alignment | gh30_3_phylogeny.aln.faa |
| Target proteins (FASTA) | gh30_3_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |