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GH144 GH GH family — see CAZy reference
995
target proteins
746
CGCs
999 / 995
tree leaves
130
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh144_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH144 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH144 | GH | 995 | — | — |
| GH3 | GH | 410 | — | — |
| S1_11 | S1 | 148 | — | — |
| GH43_28 | GH | 143 | — | — |
| CBM102 | CBM | 65 | — | — |
| GH94 | GH | 46 | — | — |
| GH97 | GH | 42 | — | — |
| GH1 | GH | 41 | — | — |
| GH2_2 | GH | 40 | — | — |
| CBM32 | CBM | 26 | — | — |
| GH186 | GH | 25 | — | — |
| S1_27 | S1 | 24 | — | — |
| S1_16 | S1 | 22 | — | — |
| GH35 | GH | 21 | — | — |
| S1_34 | S1 | 19 | — | — |
Downloads
| Full SSN (Cytoscape) | GH144_SSN.cys · 29.0 MB |
|---|---|
| Newick | gh144_phylogeny.max999.nwk |
| MUSCLE alignment | gh144_phylogeny.aln.faa |
| Target proteins (FASTA) | gh144_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |