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GH149 GH GH family — see CAZy reference
1,004
target proteins
1,000
CGCs
999 / 1,004
tree leaves
123
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh149_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH149 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH17 | GH | 1,150 | — | — |
| GH149 | GH | 1,004 | — | — |
| GH16_3 | GH | 582 | — | — |
| GH30_1 | GH | 503 | — | — |
| GH3 | GH | 217 | — | — |
| S1_56 | S1 | 212 | — | — |
| CBM102 | CBM | 209 | — | — |
| GH158 | GH | 186 | — | — |
| CBM103 | CBM | 68 | — | — |
| GH1 | GH | 46 | — | — |
| S1_19 | S1 | 46 | — | — |
| GH81 | GH | 35 | — | — |
| CBM4 | CBM | 34 | — | — |
| S1_15 | S1 | 32 | — | — |
| S1_8 | S1 | 30 | — | — |
Downloads
| Full SSN (Cytoscape) | GH149_SSN.cys · 54.8 MB |
|---|---|
| Newick | gh149_phylogeny.max999.nwk |
| MUSCLE alignment | gh149_phylogeny.aln.faa |
| Target proteins (FASTA) | gh149_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |