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GH17 GH GH family — see CAZy reference
1,614
target proteins
959
CGCs
999 / 1,614
tree leaves
104
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh17_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH17 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH17 | GH | 1,614 | — | — |
| GH149 | GH | 610 | — | — |
| GH30_1 | GH | 504 | — | — |
| GH16_3 | GH | 469 | — | — |
| S1_56 | S1 | 246 | — | — |
| CBM102 | CBM | 215 | — | — |
| GH3 | GH | 188 | — | — |
| GH158 | GH | 91 | — | — |
| CBM103 | CBM | 63 | — | — |
| S1_15 | S1 | 41 | — | — |
| CBM4 | CBM | 33 | — | — |
| GT2 | GT | 25 | — | — |
| GH81 | GH | 25 | — | — |
| S1_8 | S1 | 21 | — | — |
| S1_19 | S1 | 21 | — | — |
Downloads
| Full SSN (Cytoscape) | GH17_SSN.cys · 51.5 MB |
|---|---|
| Newick | gh17_phylogeny.max999.nwk |
| MUSCLE alignment | gh17_phylogeny.aln.faa |
| Target proteins (FASTA) | gh17_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |