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S1_56 S1 S1 family — see CAZy reference
750
target proteins
746
CGCs
999 / 750
tree leaves
211
co-occurring families
Overview
| Class | S1 |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of s1_56_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from S1_56 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| S1_56 | S1 | 750 | — | — |
| GH17 | GH | 447 | — | — |
| GH149 | GH | 209 | — | — |
| GH30_1 | GH | 192 | — | — |
| GH16_3 | GH | 183 | — | — |
| GH3 | GH | 123 | — | — |
| CBM102 | CBM | 81 | — | — |
| GH29 | GH | 63 | — | — |
| AA3_2 | AA | 61 | — | — |
| GT2 | GT | 60 | — | — |
| GT4 | GT | 38 | — | — |
| S1_15 | S1 | 35 | — | — |
| CBM103 | CBM | 32 | — | — |
| GH158 | GH | 26 | — | — |
| GH13_45 | GH | 22 | — | — |
Downloads
| Full SSN (Cytoscape) | S1_56_SSN.cys · 8.9 MB |
|---|---|
| Newick | s1_56_phylogeny.max999.nwk |
| MUSCLE alignment | s1_56_phylogeny.aln.faa |
| Target proteins (FASTA) | s1_56_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |