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GH81 GH GH family — see CAZy reference
343
target proteins
342
CGCs
all
tree leaves
88
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh81_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH81 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH81 | GH | 343 | — | — |
| GH16_3 | GH | 47 | — | — |
| GH17 | GH | 46 | — | — |
| GT2 | GT | 36 | — | — |
| GH149 | GH | 35 | — | — |
| GH3 | GH | 23 | — | — |
| GH30_1 | GH | 23 | — | — |
| GH1 | GH | 21 | — | — |
| S1_7 | S1 | 18 | — | — |
| CBM102 | CBM | 16 | — | — |
| S1_56 | S1 | 9 | — | — |
| CBM103 | CBM | 8 | — | — |
| GT4 | GT | 8 | — | — |
| S1_8 | S1 | 7 | — | — |
| S1_15 | S1 | 6 | — | — |
Downloads
| Full SSN (Cytoscape) | GH81_SSN.cys · 2.1 MB |
|---|---|
| Newick | gh81_phylogeny.nwk |
| MUSCLE alignment | gh81_phylogeny.aln.faa |
| Target proteins (FASTA) | gh81_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |