↵
GH2_4 GH GH family — see CAZy reference
288
target proteins
288
CGCs
all
tree leaves
142
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh2_4_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH2_4 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH2_4 | GH | 288 | — | — |
| GH3 | GH | 45 | — | — |
| GH31_2 | GH | 42 | — | — |
| GH16_3 | GH | 25 | — | — |
| GH88 | GH | 17 | — | — |
| GH5_4 | GH | 15 | — | — |
| GH2_2 | GH | 14 | — | — |
| GH5_46 | GH | 12 | — | — |
| S1_8 | S1 | 10 | — | — |
| S1_7 | S1 | 9 | — | — |
| GH51_3 | GH | 7 | — | — |
| GH2_10 | GH | 7 | — | — |
| PL29 | PL | 7 | — | — |
| GH28 | GH | 7 | — | — |
| GH154 | GH | 6 | — | — |
Downloads
| Full SSN (Cytoscape) | GH2_4_SSN.cys · 2.2 MB |
|---|---|
| Newick | gh2_4_phylogeny.nwk |
| MUSCLE alignment | gh2_4_phylogeny.aln.faa |
| Target proteins (FASTA) | gh2_4_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |