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S1_30 S1 S1 family — see CAZy reference
250
target proteins
247
CGCs
all
tree leaves
142
co-occurring families
Overview
| Class | S1 |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of s1_30_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from S1_30 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| S1_30 | S1 | 250 | — | — |
| PL7 | PL | 90 | — | — |
| PL6 | PL | 57 | — | — |
| PL17_2 | PL | 40 | — | — |
| GH16_3 | GH | 37 | — | — |
| GH5_46 | GH | 37 | — | — |
| S1_27 | S1 | 28 | — | — |
| GH3 | GH | 27 | — | — |
| PL7_5 | PL | 23 | — | — |
| GT2 | GT | 22 | — | — |
| S1_8 | S1 | 17 | — | — |
| GT4 | GT | 15 | — | — |
| CE20 | CE | 14 | — | — |
| S1_2 | S1 | 14 | — | — |
| S1_16 | S1 | 13 | — | — |
Downloads
| Full SSN (Cytoscape) | S1_30_SSN.cys · 1.0 MB |
|---|---|
| Newick | s1_30_phylogeny.nwk |
| MUSCLE alignment | s1_30_phylogeny.aln.faa |
| Target proteins (FASTA) | s1_30_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |