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PL7_5 PL PL family — see CAZy reference
561
target proteins
478
CGCs
999 / 561
tree leaves
102
co-occurring families
Overview
| Class | PL |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of pl7_5_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from PL7_5 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| PL7_5 | PL | 561 | — | — |
| PL6 | PL | 141 | — | — |
| PL17_2 | PL | 108 | — | — |
| PL7 | PL | 98 | — | — |
| S1_27 | S1 | 56 | — | — |
| S1_2 | S1 | 46 | — | — |
| PL6_3 | PL | 21 | — | — |
| S1_30 | S1 | 19 | — | — |
| S1_4 | S1 | 12 | — | — |
| S1_8 | S1 | 7 | — | — |
| PL15_1 | PL | 7 | — | — |
| GT4 | GT | 7 | — | — |
| PL6_2 | PL | 7 | — | — |
| PL12 | PL | 6 | — | — |
| S1_7 | S1 | 5 | — | — |
Downloads
| Full SSN (Cytoscape) | PL7_5_SSN.cys · 6.2 MB |
|---|---|
| Newick | pl7_5_phylogeny.max999.nwk |
| MUSCLE alignment | pl7_5_phylogeny.aln.faa |
| Target proteins (FASTA) | pl7_5_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |