↵
PL6_3 PL PL family — see CAZy reference
36
target proteins
36
CGCs
all
tree leaves
14
co-occurring families
Overview
| Class | PL |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of pl6_3_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from PL6_3 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| PL6_3 | PL | 36 | — | — |
| PL7_5 | PL | 30 | — | — |
| PL6 | PL | 12 | — | — |
| PL17_2 | PL | 9 | — | — |
| PL38 | PL | 4 | — | — |
| PL7 | PL | 4 | — | — |
| S1_2 | S1 | 2 | — | — |
| PL7_3 | PL | 1 | — | — |
| GH13_2 | GH | 1 | — | — |
| CE12 | CE | 1 | — | — |
| GH43_18 | GH | 1 | — | — |
| S1_24 | S1 | 1 | — | — |
| GT51 | GT | 1 | — | — |
| PL34 | PL | 1 | — | — |
Downloads
| Full SSN (Cytoscape) | PL6_3_SSN.cys · 0.1 MB |
|---|---|
| Newick | pl6_3_phylogeny.nwk |
| MUSCLE alignment | pl6_3_phylogeny.aln.faa |
| Target proteins (FASTA) | pl6_3_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |