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GH13_2 GH GH family — see CAZy reference
399
target proteins
383
CGCs
all
tree leaves
89
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh13_2_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH13_2 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH13_2 | GH | 399 | — | — |
| GH13_23 | GH | 115 | — | — |
| GH31 | GH | 65 | — | — |
| GH13_38 | GH | 51 | — | — |
| GH97 | GH | 49 | — | — |
| GH13_46 | GH | 42 | — | — |
| GH13_13 | GH | 34 | — | — |
| GH13_20 | GH | 23 | — | — |
| GH77 | GH | 23 | — | — |
| GH13_11 | GH | 23 | — | — |
| GH13_48 | GH | 22 | — | — |
| GT35 | GT | 17 | — | — |
| GH13_9 | GH | 15 | — | — |
| GH13 | GH | 10 | — | — |
| CBM69 | CBM | 8 | — | — |
Downloads
| Full SSN (Cytoscape) | GH13_2_SSN.cys · 4.2 MB |
|---|---|
| Newick | gh13_2_phylogeny.nwk |
| MUSCLE alignment | gh13_2_phylogeny.aln.faa |
| Target proteins (FASTA) | gh13_2_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |