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GH31 GH GH family — see CAZy reference
533
target proteins
2,644
CGCs
999 / 533
tree leaves
352
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh31_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH31 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH31_1 | GH | 653 | — | — |
| GH31 | GH | 533 | — | — |
| GH31_3 | GH | 419 | — | — |
| GH31_4 | GH | 268 | — | — |
| GH13_46 | GH | 224 | — | — |
| GH3 | GH | 219 | — | — |
| GH31_13 | GH | 211 | — | — |
| GH65 | GH | 190 | — | — |
| GH13_9 | GH | 180 | — | — |
| GH31_2 | GH | 180 | — | — |
| GH13_38 | GH | 163 | — | — |
| GH13_47 | GH | 153 | — | — |
| GH13_48 | GH | 149 | — | — |
| GH97 | GH | 149 | — | — |
| GH13_19 | GH | 142 | — | — |
Downloads
| Full SSN (Cytoscape) | GH31_SSN.cys · 70.3 MB |
|---|---|
| Newick | gh31_phylogeny.max999.nwk |
| MUSCLE alignment | gh31_phylogeny.aln.faa |
| Target proteins (FASTA) | gh31_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |