↵
GH13_11 GH GH family — see CAZy reference
2,415
target proteins
2,410
CGCs
999 / 2,415
tree leaves
155
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh13_11_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH13_11 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH13_11 | GH | 2,415 | — | — |
| GH13_9 | GH | 814 | — | — |
| GH77 | GH | 556 | — | — |
| GT5 | GT | 508 | — | — |
| GT35 | GT | 483 | — | — |
| GH13_10 | GH | 351 | — | — |
| GH13_26 | GH | 337 | — | — |
| GH13_3 | GH | 207 | — | — |
| GH13_16 | GH | 194 | — | — |
| GH13_23 | GH | 88 | — | — |
| S1_8 | S1 | 60 | — | — |
| GT2 | GT | 42 | — | — |
| GT4 | GT | 40 | — | — |
| S1_27 | S1 | 32 | — | — |
| GH13_13 | GH | 32 | — | — |
Downloads
| Full SSN (Cytoscape) | GH13_11_SSN.cys · 130.0 MB |
|---|---|
| Newick | gh13_11_phylogeny.max999.nwk |
| MUSCLE alignment | gh13_11_phylogeny.aln.faa |
| Target proteins (FASTA) | gh13_11_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |