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GH13_10 GH GH family — see CAZy reference
747
target proteins
742
CGCs
999 / 747
tree leaves
105
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh13_10_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH13_10 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH13_10 | GH | 747 | — | — |
| GH13_26 | GH | 463 | — | — |
| GH13_11 | GH | 354 | — | — |
| GH77 | GH | 228 | — | — |
| GH13_16 | GH | 189 | — | — |
| GH13_9 | GH | 174 | — | — |
| GH13_3 | GH | 155 | — | — |
| GT5 | GT | 92 | — | — |
| GT4 | GT | 66 | — | — |
| GH57_6 | GH | 57 | — | — |
| GT20 | GT | 27 | — | — |
| GH15 | GH | 17 | — | — |
| GH13_4 | GH | 15 | — | — |
| S1_2 | S1 | 12 | — | — |
| GH37 | GH | 11 | — | — |
Downloads
| Full SSN (Cytoscape) | GH13_10_SSN.cys · 21.7 MB |
|---|---|
| Newick | gh13_10_phylogeny.max999.nwk |
| MUSCLE alignment | gh13_10_phylogeny.aln.faa |
| Target proteins (FASTA) | gh13_10_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |