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GH13_3 GH GH family — see CAZy reference
742
target proteins
736
CGCs
999 / 742
tree leaves
92
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh13_3_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH13_3 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH13_3 | GH | 742 | — | — |
| GH13_9 | GH | 539 | — | — |
| GH13_16 | GH | 490 | — | — |
| GH13_11 | GH | 205 | — | — |
| GH13_10 | GH | 157 | — | — |
| GH77 | GH | 133 | — | — |
| GH13_26 | GH | 128 | — | — |
| GT5 | GT | 117 | — | — |
| GT35 | GT | 108 | — | — |
| GH31_1 | GH | 72 | — | — |
| S1_8 | S1 | 37 | — | — |
| GH57_6 | GH | 32 | — | — |
| S1_97 | S1 | 23 | — | — |
| GT20 | GT | 22 | — | — |
| GT4 | GT | 16 | — | — |
Downloads
| Full SSN (Cytoscape) | GH13_3_SSN.cys · 25.3 MB |
|---|---|
| Newick | gh13_3_phylogeny.max999.nwk |
| MUSCLE alignment | gh13_3_phylogeny.aln.faa |
| Target proteins (FASTA) | gh13_3_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |