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GH15 GH GH family — see CAZy reference
2,275
target proteins
2,273
CGCs
999 / 2,275
tree leaves
181
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh15_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH15 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH15 | GH | 2,275 | — | — |
| GT20 | GT | 583 | — | — |
| GT4 | GT | 115 | — | — |
| GH13_23 | GH | 103 | — | — |
| GH13_38 | GH | 77 | — | — |
| S1_2 | S1 | 67 | — | — |
| S1_21 | S1 | 51 | — | — |
| GH13_49 | GH | 51 | — | — |
| GH13_46 | GH | 50 | — | — |
| GH57_3 | GH | 41 | — | — |
| GT5 | GT | 39 | — | — |
| GH31_7 | GH | 39 | — | — |
| GH97 | GH | 37 | — | — |
| GH3 | GH | 34 | — | — |
| GT2 | GT | 33 | — | — |
Downloads
| Full SSN (Cytoscape) | GH15_SSN.cys · 57.2 MB |
|---|---|
| Newick | gh15_phylogeny.max999.nwk |
| MUSCLE alignment | gh15_phylogeny.aln.faa |
| Target proteins (FASTA) | gh15_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |